Diesel Bombers - No shut off with key

So I have just got the truck up and running with the new motor swap and the motor turns off with key but the Windows, radio and a few other accessories don't ever turn off. You can pull the key out and walk away then come back hours later and it all still works. Also the cab lights do not turn on when the two front doors are opened but they do turn on when the rear doors open

I unplugged the one wire I tapped into the fuse block to get my 12 volt ignition source to make sure it wasn't back feeding and it didn't change anything